I really like the conjugate method. I like to go heavy, and often, thus rotating exercises really is a godsend in this regard as well as increasing motivation due to less burnout. Training becomes fun again, and hitting P.R.s and continuously being allowed to lift heavy is fun...at least for me. I've been using conjugate as well, and I've found I like to alternate weeks of one heavier/partial movement with one movement that covers a longer R.O.M. and less weight the next week. For each individual, what transfers over to their lifts is individual, but I suggest doing "neglected" movements, i.e. using a narrow grip if you bench wider, high bar squat if you use Low bar, etc. Here are some examples of alternating M.E. lifts
Bench
Week 1 Lighter (Raw-bottom end)
Close Grip Bench, Incline press, Paused (numerous pause counts available), Pauses at Pins, (various heights)
Week 2 Heavier
Decline Bench, Board Presses, Floor Press, Reverse Band, Slingshot
Squat
Lighter
Front Squats, High Bar Squats, Pause w/ Low bar, Narrow/wider stances, Safety Bar Squats w/ Olympic shoes
Heavier
Box Squats, Anderson Squats, Zerchers (for me, anyways)
By alternating weeks, I get the feel of heavier weights and also a bit of a deload and practice the next week via a larger R.O.M. to transfer better to the sticking points more common as a raw lifter, i.e. the bottom 1/2 of the lifts. All these lifts can be modified several times over by combining the method of alternating implements, stance width, pauses, R.O.M., speed of the lift and a few others I may be forgetting. i.e. do Anderson squats with a narrow stance for conventional deadlifter leg drive or using a wide grip on floor press can help you get used to lowering and raising a heavier weight, while using a close grip will make it much more of a longer R.O.M and force the arm extensors to work harder. The options are limitless, almost. Different bars such as football bars or Duffalo bars can also be used for bench to spare shoulders or increase R.O.M while the Safety Bar places the bar higher on the back, forcing the upper back to be driven into it on ascent, which may help a lifter, like myself, who's bum seems to rise before the back out of the hole.
It really comes down to what you need, at that specific time. I've found that pre-planning M.E. lifts is futile, as once I get to the gym, my warmup will usually tell me what I need to do. If you are new to a lift like the floor press, you'll probably be able to do that lift for several weeks with progression, so some experimentation will be required to make the recipe for you just right and to find what lifts have the most transfer to yours. You may find certain lifts help a bit, and some not at all. For example, I know when my close grip bench and floor press go up, my bench goes up with it without any training. Same with my front squat and box squat for my low bar squat.